Friday 25 July, 2014

Genetic study sheds light on chronic pain

Published On: Fri, May 7th, 2010 | Bioinformatics | By BioNews

Chronic pain, which often occurs without an apparent cause, may be caused by the inadvertent reprogramming of more than 2,000 genes in the peripheral nervous system, suggests new research.

Mayo Clinic researchers think that the finding could ultimately lead to ‘transcription therapy’, which would employ drugs that kill pain by correcting the activity of specific genes.

The researchers focused on nerve cells suspected to be involved in pain: dorsal root ganglion neurons of the peripheral nervous system in rodent models. They performed high-throughput sequencing of hundreds of millions of mRNA molecules, the messengers of gene activity.

Powerful computer science was required to sort through the many pieces of information (50 base-pair long mRNA sequence “reads”) assembling the complicated genomic puzzle.

The resulting picture revealed a number of surprises, among them 10,464 novel exons (sections of the genome involved in creating proteins) and some 400 gene candidates described for the first time in the study.

Furthermore, detailed building plans for thousands of spliced mRNA were mapped.

“Using this new approach offers greater sensitivity, dynamic range and more efficient unbiased genetic mapping compared to the previous microarray-based methods and may be an efficient new approach to a wide array of problems in neuroscience research,” says Andreas Beutler, Mayo Clinic oncologist and co-author on the study.

The findings appear in the current issue of the journal Genome Research. (ANI)

Reference:
mRNA-seq with agnostic splice site discovery for nervous system transcriptomics tested in chronic pain

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